Download files to cluster

Here is an example on how to download FastaX software from internet directly to Sapelo2. Use ssh to login to xfer. To transfer data between two file systems that are available on the xfer node, you can use the cp or the rsync commands.

If you have many files to copy, then a good option is to use the fpsync command, as that will allow the use of multiple cores. Users can transfer files between their local machines and the teaching cluster using a Filezilla, b a secure copy scp , or c WinSCP. Access to txfer. To transfer files from your local storage device to the teaching cluster, please connect to txfer. In order to use FileZilla to transfer files between a local machine and the teaching cluster, users will need to install the FileZilla software on the local machine.

To transfer files between your Sapelo2 directories e. Replace the sections in bold with the information you gathered in step 1. For example, the command used for this example is:.

Open up a command line in Windows. Windows 10 already has SCP installed by default. The color contrasts with the yellow, and syntax highlighting is a nice change from the drab command line. As you can see, you first need to confirm the connection using the RSA fingerprint of the remote server. That connection will be securely encrypted, it is a very secure way to copy files between computers.

SCP uses by default the port 22, and connect via an encrypted connection or secure shell connection. You can use SCP to copy files from or to a remote server. You can also copy files from one remote server to another remote server, without passing traffic through your PC. Explaining the complete syntax and every option of this command is out of the scope of this page, you can always enter a the command prompt " man scp".

You can read more details online here. If you want to keep two directories one on your laptop, and one on the cluster in sync, you can do that with rsync using its --delete option. But that is only one-way so you need to really think in what direction you do it, and it does not scale beyond two synchronized directories.

A real option is to use Unison , a piece of software that can detect and handle conflicts incompatible changes made to the same file in the two directories that must be kept in sync. Docs » Transferring files to and from the clusters.

To transfer data between cluster, see the section trsf in Using the common filesystem Those examples are only for Linux and MacOs computers or if you are using WSL. Podcast what if you could invest in your favorite developer? Featured on Meta. Now live: A fully responsive profile. Reducing the weight of our footer. Linked Related Hot Network Questions. Question feed. Stack Overflow works best with JavaScript enabled.